Processed data supporting the manuscript "Single-cell transcriptomics reveals immune suppression and cell states predictive of patient outcomes in rhabdomyosarcoma"

Table_4_Dynamics of Whole Transcriptome Analysis (WTA) and Surface markers expression (AbSeq) in Immune Cells of COVID-19 Patients and Recovered captured through Single Cell Genomics.xlsx

Jyoti Soni (14138172)
Partha Chattopadhyay (1789183)
Priyanka Mehta (3213543)
Ramakant Mohite (17875586)
Kishore Tardalkar (14206856)
Meghnad Joshi (14206859)
Rajesh Pandey (4378585)

January 2024

IntroductionSingle-cell multi-omics studies, such as multidimensional transcriptomics (whole transcr...

Table_7_Dynamics of Whole Transcriptome Analysis (WTA) and Surface markers expression (AbSeq) in Immune Cells of COVID-19 Patients and Recovered captured through Single Cell Genomics.xlsx

Jyoti Soni (14138172)
Partha Chattopadhyay (1789183)
Priyanka Mehta (3213543)
Ramakant Mohite (17875586)
Kishore Tardalkar (14206856)
Meghnad Joshi (14206859)
Rajesh Pandey (4378585)

January 2024

IntroductionSingle-cell multi-omics studies, such as multidimensional transcriptomics (whole transcr...

Table_9_Dynamics of Whole Transcriptome Analysis (WTA) and Surface markers expression (AbSeq) in Immune Cells of COVID-19 Patients and Recovered captured through Single Cell Genomics.xlsx

Jyoti Soni (14138172)
Partha Chattopadhyay (1789183)
Priyanka Mehta (3213543)
Ramakant Mohite (17875586)
Kishore Tardalkar (14206856)
Meghnad Joshi (14206859)
Rajesh Pandey (4378585)

January 2024

IntroductionSingle-cell multi-omics studies, such as multidimensional transcriptomics (whole transcr...

Processed data supporting the manuscript "Single-cell transcriptomics reveals immune suppression and cell states predictive of patient outcomes in rhabdomyosarcoma"

DeMartino, Jeff
Visser, Lindy
Meister, Michael
Margaritis, Thanasis
Drost, Jarno

May 2023

This submission contains the compiled count tables and processed R objects accompanying our manuscri...

Processed data and scripts supporting the manuscript "Single-cell transcriptomics reveals immune suppression and cell states predictive of patient outcomes in rhabdomyosarcoma"

DeMartino, Jeff
Visser, Lindy
Meister, Michael
Margaritis, Thanasis
Drost, Jarno

May 2023

This submission contains the compiled count table, processed R objects and various scripts and outpu...

Predicting patient treatment response and resistance via single-cell transcriptomics of their tumors

Sanju Sinha

April 2022

Data required to reproduce the results/figures of the "Predicting patient treatment response and res...

Single-cell transcriptomics reveals pre-existing factors in lung cancers for the vulnerability to COVID-19

Wendao Liu

August 2023

This dataset contains the processed scRNA-seq data and code used to investigate the association betw...

Data_Sheet_1_Dynamics of Whole Transcriptome Analysis (WTA) and Surface markers expression (AbSeq) in Immune Cells of COVID-19 Patients and Recovered captured through Single Cell Genomics.pdf

Jyoti Soni (14138172)
Partha Chattopadhyay (1789183)
Priyanka Mehta (3213543)
Ramakant Mohite (17875586)
Kishore Tardalkar (14206856)
Meghnad Joshi (14206859)
Rajesh Pandey (4378585)

January 2024

IntroductionSingle-cell multi-omics studies, such as multidimensional transcriptomics (whole transcr...

Table_2_Dynamics of Whole Transcriptome Analysis (WTA) and Surface markers expression (AbSeq) in Immune Cells of COVID-19 Patients and Recovered captured through Single Cell Genomics.pdf

Jyoti Soni (14138172)
Partha Chattopadhyay (1789183)
Priyanka Mehta (3213543)
Ramakant Mohite (17875586)
Kishore Tardalkar (14206856)
Meghnad Joshi (14206859)
Rajesh Pandey (4378585)

January 2024

IntroductionSingle-cell multi-omics studies, such as multidimensional transcriptomics (whole transcr...

Table_3_Dynamics of Whole Transcriptome Analysis (WTA) and Surface markers expression (AbSeq) in Immune Cells of COVID-19 Patients and Recovered captured through Single Cell Genomics.pdf

Jyoti Soni (14138172)
Partha Chattopadhyay (1789183)
Priyanka Mehta (3213543)
Ramakant Mohite (17875586)
Kishore Tardalkar (14206856)
Meghnad Joshi (14206859)
Rajesh Pandey (4378585)

January 2024

IntroductionSingle-cell multi-omics studies, such as multidimensional transcriptomics (whole transcr...

Table_8_Dynamics of Whole Transcriptome Analysis (WTA) and Surface markers expression (AbSeq) in Immune Cells of COVID-19 Patients and Recovered captured through Single Cell Genomics.pdf

Jyoti Soni (14138172)
Partha Chattopadhyay (1789183)
Priyanka Mehta (3213543)
Ramakant Mohite (17875586)
Kishore Tardalkar (14206856)
Meghnad Joshi (14206859)
Rajesh Pandey (4378585)

January 2024

IntroductionSingle-cell multi-omics studies, such as multidimensional transcriptomics (whole transcr...

Immune cell dynamics deconvoluted by single-cell RNA sequencing in normothermic machine perfusion of the liver

Hautz, Theresa
Salcher, Stefan
Fodor, Margot
Sturm, Gregor
Ebner, Susanne
Mair, Anna
Trebo, Manuel
Untergasser, Gerold
Sopper, Sieghart
Cardini, Benno
Martovicz, Agnieszka
Hofmann, Julia
Daum, Sophia
Kalb, Marcus
Resch, Thomas
Krendl, Felix
Weissenbacher, Annemarie
Otarashvili, Giorgi
Obrist, Peter
Zelger, Bettina
Öfner, Dietmar
Trajanoski, Zlatko
Troppmair, Jakob
Oberhuber, Rupert
Pircher, Andreas
Wolf, Dominik
Schneeberger, Stefan

October 2022

This archive contains input data, singularity containers as well as all results related to the singl...

Integrated Data of Single cell RNA sequencing for Human Pancreatic Adenocarcinoma

Chijimatsu, Ryota

February 2022

These data are collected and integrated from five available deposit data and one original data of si...

Table_1_Dynamics of Whole Transcriptome Analysis (WTA) and Surface markers expression (AbSeq) in Immune Cells of COVID-19 Patients and Recovered captured through Single Cell Genomics.XLSX

Jyoti Soni (14138172)
Partha Chattopadhyay (1789183)
Priyanka Mehta (3213543)
Ramakant Mohite (17875586)
Kishore Tardalkar (14206856)
Meghnad Joshi (14206859)
Rajesh Pandey (4378585)

January 2024

IntroductionSingle-cell multi-omics studies, such as multidimensional transcriptomics (whole transcr...

Table4_Identification of differentially expressed genes at the single-cell level and prognosis prediction through bulk RNA sequencing data in breast cancer.XLSX

Hanghang Chen (12439370)
Tian Tian (170088)
Haihua Luo (417510)
Yong Jiang (124303)

September 2022

Background: The invention and development of single-cell technologies have contributed a lot to the ...

Table_4_Dynamics of Whole Transcriptome Analysis (WTA) and Surface markers expression (AbSeq) in Immune Cells of COVID-19 Patients and Recovered captured through Single Cell Genomics.xlsx

Jyoti Soni (14138172)
Partha Chattopadhyay (1789183)
Priyanka Mehta (3213543)
Ramakant Mohite (17875586)
Kishore Tardalkar (14206856)
Meghnad Joshi (14206859)
Rajesh Pandey (4378585)

January 2024

IntroductionSingle-cell multi-omics studies, such as multidimensional transcriptomics (whole transcr...

Table_7_Dynamics of Whole Transcriptome Analysis (WTA) and Surface markers expression (AbSeq) in Immune Cells of COVID-19 Patients and Recovered captured through Single Cell Genomics.xlsx

Jyoti Soni (14138172)
Partha Chattopadhyay (1789183)
Priyanka Mehta (3213543)
Ramakant Mohite (17875586)
Kishore Tardalkar (14206856)
Meghnad Joshi (14206859)
Rajesh Pandey (4378585)

January 2024

IntroductionSingle-cell multi-omics studies, such as multidimensional transcriptomics (whole transcr...

Table_9_Dynamics of Whole Transcriptome Analysis (WTA) and Surface markers expression (AbSeq) in Immune Cells of COVID-19 Patients and Recovered captured through Single Cell Genomics.xlsx

Jyoti Soni (14138172)
Partha Chattopadhyay (1789183)
Priyanka Mehta (3213543)
Ramakant Mohite (17875586)
Kishore Tardalkar (14206856)
Meghnad Joshi (14206859)
Rajesh Pandey (4378585)

January 2024

IntroductionSingle-cell multi-omics studies, such as multidimensional transcriptomics (whole transcr...

Processed data supporting the manuscript "Single-cell transcriptomics reveals immune suppression and cell states predictive of patient outcomes in rhabdomyosarcoma"

DeMartino, Jeff
Visser, Lindy
Meister, Michael
Margaritis, Thanasis
Drost, Jarno

May 2023

This submission contains the compiled count tables and processed R objects accompanying our manuscri...

Processed data and scripts supporting the manuscript "Single-cell transcriptomics reveals immune suppression and cell states predictive of patient outcomes in rhabdomyosarcoma"

DeMartino, Jeff
Visser, Lindy
Meister, Michael
Margaritis, Thanasis
Drost, Jarno

May 2023

This submission contains the compiled count table, processed R objects and various scripts and outpu...

Predicting patient treatment response and resistance via single-cell transcriptomics of their tumors

Sanju Sinha

April 2022

Data required to reproduce the results/figures of the "Predicting patient treatment response and res...

Single-cell transcriptomics reveals pre-existing factors in lung cancers for the vulnerability to COVID-19

Wendao Liu

August 2023

This dataset contains the processed scRNA-seq data and code used to investigate the association betw...

Data_Sheet_1_Dynamics of Whole Transcriptome Analysis (WTA) and Surface markers expression (AbSeq) in Immune Cells of COVID-19 Patients and Recovered captured through Single Cell Genomics.pdf

Jyoti Soni (14138172)
Partha Chattopadhyay (1789183)
Priyanka Mehta (3213543)
Ramakant Mohite (17875586)
Kishore Tardalkar (14206856)
Meghnad Joshi (14206859)
Rajesh Pandey (4378585)

January 2024

IntroductionSingle-cell multi-omics studies, such as multidimensional transcriptomics (whole transcr...

Table_2_Dynamics of Whole Transcriptome Analysis (WTA) and Surface markers expression (AbSeq) in Immune Cells of COVID-19 Patients and Recovered captured through Single Cell Genomics.pdf

Jyoti Soni (14138172)
Partha Chattopadhyay (1789183)
Priyanka Mehta (3213543)
Ramakant Mohite (17875586)
Kishore Tardalkar (14206856)
Meghnad Joshi (14206859)
Rajesh Pandey (4378585)

January 2024

IntroductionSingle-cell multi-omics studies, such as multidimensional transcriptomics (whole transcr...

Table_3_Dynamics of Whole Transcriptome Analysis (WTA) and Surface markers expression (AbSeq) in Immune Cells of COVID-19 Patients and Recovered captured through Single Cell Genomics.pdf

Jyoti Soni (14138172)
Partha Chattopadhyay (1789183)
Priyanka Mehta (3213543)
Ramakant Mohite (17875586)
Kishore Tardalkar (14206856)
Meghnad Joshi (14206859)
Rajesh Pandey (4378585)

January 2024

IntroductionSingle-cell multi-omics studies, such as multidimensional transcriptomics (whole transcr...

Table_8_Dynamics of Whole Transcriptome Analysis (WTA) and Surface markers expression (AbSeq) in Immune Cells of COVID-19 Patients and Recovered captured through Single Cell Genomics.pdf

Jyoti Soni (14138172)
Partha Chattopadhyay (1789183)
Priyanka Mehta (3213543)
Ramakant Mohite (17875586)
Kishore Tardalkar (14206856)
Meghnad Joshi (14206859)
Rajesh Pandey (4378585)

January 2024

IntroductionSingle-cell multi-omics studies, such as multidimensional transcriptomics (whole transcr...

Immune cell dynamics deconvoluted by single-cell RNA sequencing in normothermic machine perfusion of the liver

Hautz, Theresa
Salcher, Stefan
Fodor, Margot
Sturm, Gregor
Ebner, Susanne
Mair, Anna
Trebo, Manuel
Untergasser, Gerold
Sopper, Sieghart
Cardini, Benno
Martovicz, Agnieszka
Hofmann, Julia
Daum, Sophia
Kalb, Marcus
Resch, Thomas
Krendl, Felix
Weissenbacher, Annemarie
Otarashvili, Giorgi
Obrist, Peter
Zelger, Bettina
Öfner, Dietmar
Trajanoski, Zlatko
Troppmair, Jakob
Oberhuber, Rupert
Pircher, Andreas
Wolf, Dominik
Schneeberger, Stefan

October 2022

This archive contains input data, singularity containers as well as all results related to the singl...

Integrated Data of Single cell RNA sequencing for Human Pancreatic Adenocarcinoma

Chijimatsu, Ryota

February 2022

These data are collected and integrated from five available deposit data and one original data of si...

Table_1_Dynamics of Whole Transcriptome Analysis (WTA) and Surface markers expression (AbSeq) in Immune Cells of COVID-19 Patients and Recovered captured through Single Cell Genomics.XLSX

Jyoti Soni (14138172)
Partha Chattopadhyay (1789183)
Priyanka Mehta (3213543)
Ramakant Mohite (17875586)
Kishore Tardalkar (14206856)
Meghnad Joshi (14206859)
Rajesh Pandey (4378585)

January 2024

IntroductionSingle-cell multi-omics studies, such as multidimensional transcriptomics (whole transcr...

Table4_Identification of differentially expressed genes at the single-cell level and prognosis prediction through bulk RNA sequencing data in breast cancer.XLSX

Hanghang Chen (12439370)
Tian Tian (170088)
Haihua Luo (417510)
Yong Jiang (124303)

September 2022

Background: The invention and development of single-cell technologies have contributed a lot to the ...

Table_4_Dynamics of Whole Transcriptome Analysis (WTA) and Surface markers expression (AbSeq) in Immune Cells of COVID-19 Patients and Recovered captured through Single Cell Genomics.xlsx

Jyoti Soni (14138172)
Partha Chattopadhyay (1789183)
Priyanka Mehta (3213543)
Ramakant Mohite (17875586)
Kishore Tardalkar (14206856)
Meghnad Joshi (14206859)
Rajesh Pandey (4378585)

January 2024

IntroductionSingle-cell multi-omics studies, such as multidimensional transcriptomics (whole transcr...

Table_7_Dynamics of Whole Transcriptome Analysis (WTA) and Surface markers expression (AbSeq) in Immune Cells of COVID-19 Patients and Recovered captured through Single Cell Genomics.xlsx

Jyoti Soni (14138172)
Partha Chattopadhyay (1789183)
Priyanka Mehta (3213543)
Ramakant Mohite (17875586)
Kishore Tardalkar (14206856)
Meghnad Joshi (14206859)
Rajesh Pandey (4378585)

January 2024

IntroductionSingle-cell multi-omics studies, such as multidimensional transcriptomics (whole transcr...

Table_9_Dynamics of Whole Transcriptome Analysis (WTA) and Surface markers expression (AbSeq) in Immune Cells of COVID-19 Patients and Recovered captured through Single Cell Genomics.xlsx

Jyoti Soni (14138172)
Partha Chattopadhyay (1789183)
Priyanka Mehta (3213543)
Ramakant Mohite (17875586)
Kishore Tardalkar (14206856)
Meghnad Joshi (14206859)
Rajesh Pandey (4378585)

January 2024

IntroductionSingle-cell multi-omics studies, such as multidimensional transcriptomics (whole transcr...

Processed data supporting the manuscript "Single-cell transcriptomics reveals immune suppression and cell states predictive of patient outcomes in rhabdomyosarcoma"

Abstract

Extracted data

Processed data supporting the manuscript "Single-cell transcriptomics reveals immune suppression and cell states predictive of patient outcomes in rhabdomyosarcoma"

Abstract

Extracted data

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